NCS3 : Papers and Publications

Publications, Technical Reports and Abstracts

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Date Posted On Papers & Publications
08 Sep 2008 Brainlab: a toolkit to aid in the design, simulation, and analysis of spiking neural networks with the NCS environment  Abstract

by R. Drewes

Open (1807 KB)

17 Aug 2008 Framework and Implications of Virtual Neurorobotics. Frontiers in Neuroscience 2008 (2,1: doi:10.3389/neuro.01.007.2008)  Abstract

by Goodman PH, Zou Q, Dascalu SM.

Open (409 KB)

17 Aug 2008 Recreating the ion channel diversity underlying morpho-electrical subtypes of neocortical neurons. Federation of European Neuroscience (poster 154.32 FENS). July 15, 2008, Geneva.  Abstract

by Khazen G, Hill SL, Schuermann F, Goodman P, Markram H.

Open (20 KB)

17 Aug 2008 Calibrating and validating the biological accuracy of a model neocortical column: from ion channels to network dynamics. Federation of European Neuroscience (poster 154.32 FENS). July 15, 2008, Geneva.   Abstract

by Markram H, Druckmann S, Gidon A, Hay E, King JG, Ramaswamy S, Ranjan R, Riachi I, Sfyrakis K, Schuermann F, Hill SL.

Open (21 KB)

28 Dec 2007 RAIN and NCS5 Benchmarks  Abstract

by Milind Zirpe

Open (12624 KB)

28 Dec 2007 Simulation of networks of spiking neurons: A review of tools and strategies  Abstract

by Brette R et al.

Open (0 KB)

28 Dec 2007 Virtual neurorobotics (VNR) to accelerate development of plausible neuromorphic brain architectures. Frontiers in Neurorobotics 2007.  Abstract

by Goodman P, Buntha S, Zou Q, Dascalu SM.

Open (428 KB)

02 Nov 2006 Fast oscillations trigger bursts of action potentials in neocortical neurons in vitro: a quasi-white-noise analysis study.   Abstract

by Schindler KA, Goodman PH, Wieser HG, Douglas RJ.

Open (597 KB)

02 Nov 2006 The Accuracy of Artificial Neural Networks in Predicting Long-term Outcome After Traumatic Brain Injury  Abstract

by Segal M, Goodman P, Goldstein R et al.

Open (0 KB)

02 Nov 2006 Brainstem: A NeoCortical Simulator Interface for Robotic Studies (Master's Thesis)  Abstract

by Qunming Peng

Open (1377 KB)

21 May 2006 Neocortical Keys and Locks: A Neural Model of Associative Learning by Coherence Induction Between Spike Patterns and Ongoing Membrane Potentials.  Abstract

by Doursat R, Goodman PH.

Open (93 KB)

11 Apr 2006 Heterogeneity in the pyramidal network of the medial prefrontal cortex. Nature Neuroscience. 2006 Apr;9(4):534-42.  Abstract

by Wang Y, Markram H, Goodman PH, Berger TK, Ma J, Goldman-Rakic PS.

Open (567 KB)

11 Apr 2006 Neuropeptide and calcium-binding protein gene expression profiles predict neuronal anatomical type in the juvenile rat. Journal of Physiology. 2005 Sep 1;567(Pt 2):401-13.  Abstract

by Toledo-Rodriguez M, Goodman P, Illic M, Wu C, Markram H.

Open (335 KB)

11 Apr 2006 Correlation Maps Allow Neuronal Electrical Properties to be Predicted from Single-cell Gene Expression Profiles in Rat Neocortex. Cerebral Cortex 2004 Dec;14:1310–1327.  Abstract

by Toledo-Rodriguez M, Blumenfeld B, Wu C, Luo J, Attali B, Goodman P, Markram H.

Open (0 KB)

07 Nov 2005 BlueGene Progress Report  Abstract

by James Frye

Open (76 KB)

07 Nov 2005 Implementation of a Biologically Realistic Parallel Neocortical-Neural Network Simulator in Proceedings of the Tenth SIAM Conf. on Parallel Process. for Sci. Comp. March 12-14, 2001, Portsmouth, Virginia  Abstract

by E. Courtenay Wilson, Phillip H. Goodman, and Frederick C. Harris, Jr.

Open (175 KB)

07 Nov 2005 Brain Communication Server: A Dynamic Data Transferal System for A Parallel Brain Simulator  Abstract

by James G. King

Open (0 KB)

06 Apr 2005 An evolutionary autonomous agent with visual cortex and recurrent spiking columnar neural network.  Abstract

by Rich Drewes, James Maciokas, Sushil J. Louis, and Philip Goodman

Open (113 KB)

23 May 2004 Accurate Dynamical Models of Interneuronal GABAergic Channel Physiologies  Abstract

by James Maciokas, Philip Goodman, et al

Open (158 KB)

21 Mar 2004 Remote-Neocortex Control of Robotic Search and Threat Identification  Abstract

by Macera Rios, Goodman, Drewes, Harris, Maciokas

Open (552 KB)

16 Dec 2003 Parallel Optimization of a NeoCortical Simulation Program  Abstract

by James Frye

Open (414 KB)

12 Dec 2003 Design and Implementation of a Hierarchical Robotic System: A Platform for Artificial Intelligence Investigation (Master's Thesis)  Abstract

by Juan C. Macera

Open (1744 KB)

31 Oct 2003 A Novel Parallel Hardware and Software Solution for a Large-Scale Biologically Realistic Cortical Simulation  Abstract

by Harris, Baurick, Frye, King, Ballew, Goodman, Drewes

Open (160 KB)

31 Oct 2003 Large-Scale Spike-Timing-Dependent-Plasticity Model of Bimodal (Audio/Visual) Processing  Abstract

by Maciokas, Goodman

Open (929 KB)

31 Oct 2003 Accurate Dynamical Model of Interneuronal GABAergic Channel Physiologies  Abstract

by Maciokas, Goodman, Kenyon

Open (253 KB)

31 Oct 2003 Towards an Understanding of the Synergistic Properties of Cortical Processing: A Neuronal Computational Modeling Approach [Doctoral Dissertation]   Abstract

by James B. Maciokas

Open (3208 KB)

06 Feb 2003 Design and Implementation of a Web Portal for a NeoCortical Simulator  Abstract

by Waikul, Jiang, Wilson, Harris, Goodman

Open (248 KB)

19 Dec 2002 Large-Scale Parallel Simulation of Physiologically Realistic Multicolumn Sensory Cortex  Abstract

by Goodman, Wilson, Maciokas

Open (231 KB)

26 Jul 2001 ENHANCEMENT OF MEMORY IN A SIMULATION OF ALZHEIMER'S DEMENTIA: ROLE OF A-TYPE POTASSIUM CHANNELS.  Abstract

by Jamie L Weibers, Philip H Goodman, Henry Markram

Open (10 KB)

26 Jul 2001 CUMULATIVE SYNAPTIC LOSS IN AGING AND ALZHEIMER'S DEMENTIA: A BIOLOGICALLY REALISTIC COMPUTER MODEL.  Abstract

by Matt M Kellogg, Heath R Wills, Philip H Goodman

Open (14 KB)

26 Jul 2001 BIOLOGICALLY REALISTIC COMPUTER MODEL OF NEOCORTICAL ASSOCIATIVE LEARNING FOR THE STUDY OF AGING AND DEMENTIA.  Abstract

by Heath R Wills, Matt M Kellogg, Philip H Goodman

Open (23 KB)

26 Jul 2001 NEURAL NETWORKS: ADVANTAGES AND LIMITATIONS FOR BIOSTATISTICAL MODELING  Abstract

by Philip H. Goodman, Frank E. Harrell, Jr.

Open (176 KB)

26 Jul 2001 Artificial neural networks improve the accuracy of cancer survival prediction  Abstract

by Harry B. Burke, M.D., Ph.D., Philip H. Goodman, M.D., M.S., David B. Rosen, Ph.D. , Donald E. Henson, M.D. , John N. Weinstein, M.D., Ph.D.4, Frank E. Harrell Jr., Ph.D. , Jeffrey R. Marks, Ph.D. , David P. Winchester, M.D. , David G. Bostwick, M.D

Open (110 KB)

18 Jul 2001 NevProp Manual with Introduction to Artificial Neural Network Theory  Abstract

by Philip H. Goodman, Frank E. Harrell, Jr.

Open (964 KB)

Date Posted On Software
08 Aug 2003 EvalCellTracings: Multicell Tracing Analysis Tool  Abstract

by Phil Goodman

Download (5069 KB)

07 Aug 2003 NEUROPLOT: Software for Analysis of Large-Scale NN Data  Abstract

by P Goodman

Download (86 KB)

26 Jul 2001 NevProp Artificial Neural Network Software with Cross-Validation and Boostrapped Confidence Intervals   Abstract

by Philip H. Goodman, David B. Rosen

Download (1131 KB)

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Date Posted On	Papers & Publications
08 Sep 2008	Brainlab: a toolkit to aid in the design, simulation, and analysis of spiking neural networks with the NCS environment Abstract by R. Drewes

	Open (1807 KB)


17 Aug 2008	Framework and Implications of Virtual Neurorobotics. Frontiers in Neuroscience 2008 (2,1: doi:10.3389/neuro.01.007.2008) Abstract by Goodman PH, Zou Q, Dascalu SM.

	Open (409 KB)


17 Aug 2008	Recreating the ion channel diversity underlying morpho-electrical subtypes of neocortical neurons. Federation of European Neuroscience (poster 154.32 FENS). July 15, 2008, Geneva. Abstract by Khazen G, Hill SL, Schuermann F, Goodman P, Markram H.

	Open (20 KB)


17 Aug 2008	Calibrating and validating the biological accuracy of a model neocortical column: from ion channels to network dynamics. Federation of European Neuroscience (poster 154.32 FENS). July 15, 2008, Geneva. Abstract by Markram H, Druckmann S, Gidon A, Hay E, King JG, Ramaswamy S, Ranjan R, Riachi I, Sfyrakis K, Schuermann F, Hill SL.

	Open (21 KB)


28 Dec 2007	RAIN and NCS5 Benchmarks Abstract by Milind Zirpe

	Open (12624 KB)


28 Dec 2007	Simulation of networks of spiking neurons: A review of tools and strategies Abstract by Brette R et al.

	Open (0 KB)


28 Dec 2007	Virtual neurorobotics (VNR) to accelerate development of plausible neuromorphic brain architectures. Frontiers in Neurorobotics 2007. Abstract by Goodman P, Buntha S, Zou Q, Dascalu SM.

	Open (428 KB)


02 Nov 2006	Fast oscillations trigger bursts of action potentials in neocortical neurons in vitro: a quasi-white-noise analysis study. Abstract by Schindler KA, Goodman PH, Wieser HG, Douglas RJ.

	Open (597 KB)


02 Nov 2006	The Accuracy of Artificial Neural Networks in Predicting Long-term Outcome After Traumatic Brain Injury Abstract by Segal M, Goodman P, Goldstein R et al.

	Open (0 KB)


02 Nov 2006	Brainstem: A NeoCortical Simulator Interface for Robotic Studies (Master's Thesis) Abstract by Qunming Peng

	Open (1377 KB)


21 May 2006	Neocortical Keys and Locks: A Neural Model of Associative Learning by Coherence Induction Between Spike Patterns and Ongoing Membrane Potentials. Abstract by Doursat R, Goodman PH.

	Open (93 KB)


11 Apr 2006	Heterogeneity in the pyramidal network of the medial prefrontal cortex. Nature Neuroscience. 2006 Apr;9(4):534-42. Abstract by Wang Y, Markram H, Goodman PH, Berger TK, Ma J, Goldman-Rakic PS.

	Open (567 KB)


11 Apr 2006	Neuropeptide and calcium-binding protein gene expression profiles predict neuronal anatomical type in the juvenile rat. Journal of Physiology. 2005 Sep 1;567(Pt 2):401-13. Abstract by Toledo-Rodriguez M, Goodman P, Illic M, Wu C, Markram H.

	Open (335 KB)


11 Apr 2006	Correlation Maps Allow Neuronal Electrical Properties to be Predicted from Single-cell Gene Expression Profiles in Rat Neocortex. Cerebral Cortex 2004 Dec;14:1310–1327. Abstract by Toledo-Rodriguez M, Blumenfeld B, Wu C, Luo J, Attali B, Goodman P, Markram H.

	Open (0 KB)


07 Nov 2005	BlueGene Progress Report Abstract by James Frye

	Open (76 KB)


07 Nov 2005	Implementation of a Biologically Realistic Parallel Neocortical-Neural Network Simulator in Proceedings of the Tenth SIAM Conf. on Parallel Process. for Sci. Comp. March 12-14, 2001, Portsmouth, Virginia Abstract by E. Courtenay Wilson, Phillip H. Goodman, and Frederick C. Harris, Jr.

	Open (175 KB)


07 Nov 2005	Brain Communication Server: A Dynamic Data Transferal System for A Parallel Brain Simulator Abstract by James G. King

	Open (0 KB)


06 Apr 2005	An evolutionary autonomous agent with visual cortex and recurrent spiking columnar neural network. Abstract by Rich Drewes, James Maciokas, Sushil J. Louis, and Philip Goodman

	Open (113 KB)


23 May 2004	Accurate Dynamical Models of Interneuronal GABAergic Channel Physiologies Abstract by James Maciokas, Philip Goodman, et al

	Open (158 KB)


21 Mar 2004	Remote-Neocortex Control of Robotic Search and Threat Identification Abstract by Macera Rios, Goodman, Drewes, Harris, Maciokas

	Open (552 KB)


16 Dec 2003	Parallel Optimization of a NeoCortical Simulation Program Abstract by James Frye

	Open (414 KB)


12 Dec 2003	Design and Implementation of a Hierarchical Robotic System: A Platform for Artificial Intelligence Investigation (Master's Thesis) Abstract by Juan C. Macera

	Open (1744 KB)


31 Oct 2003	A Novel Parallel Hardware and Software Solution for a Large-Scale Biologically Realistic Cortical Simulation Abstract by Harris, Baurick, Frye, King, Ballew, Goodman, Drewes

	Open (160 KB)


31 Oct 2003	Large-Scale Spike-Timing-Dependent-Plasticity Model of Bimodal (Audio/Visual) Processing Abstract by Maciokas, Goodman

	Open (929 KB)


31 Oct 2003	Accurate Dynamical Model of Interneuronal GABAergic Channel Physiologies Abstract by Maciokas, Goodman, Kenyon

	Open (253 KB)


31 Oct 2003	Towards an Understanding of the Synergistic Properties of Cortical Processing: A Neuronal Computational Modeling Approach [Doctoral Dissertation] Abstract by James B. Maciokas

	Open (3208 KB)


06 Feb 2003	Design and Implementation of a Web Portal for a NeoCortical Simulator Abstract by Waikul, Jiang, Wilson, Harris, Goodman

	Open (248 KB)


19 Dec 2002	Large-Scale Parallel Simulation of Physiologically Realistic Multicolumn Sensory Cortex Abstract by Goodman, Wilson, Maciokas

	Open (231 KB)


26 Jul 2001	ENHANCEMENT OF MEMORY IN A SIMULATION OF ALZHEIMER'S DEMENTIA: ROLE OF A-TYPE POTASSIUM CHANNELS. Abstract by Jamie L Weibers, Philip H Goodman, Henry Markram

	Open (10 KB)


26 Jul 2001	CUMULATIVE SYNAPTIC LOSS IN AGING AND ALZHEIMER'S DEMENTIA: A BIOLOGICALLY REALISTIC COMPUTER MODEL. Abstract by Matt M Kellogg, Heath R Wills, Philip H Goodman

	Open (14 KB)


26 Jul 2001	BIOLOGICALLY REALISTIC COMPUTER MODEL OF NEOCORTICAL ASSOCIATIVE LEARNING FOR THE STUDY OF AGING AND DEMENTIA. Abstract by Heath R Wills, Matt M Kellogg, Philip H Goodman

	Open (23 KB)


26 Jul 2001	NEURAL NETWORKS: ADVANTAGES AND LIMITATIONS FOR BIOSTATISTICAL MODELING Abstract by Philip H. Goodman, Frank E. Harrell, Jr.

	Open (176 KB)


26 Jul 2001	Artificial neural networks improve the accuracy of cancer survival prediction Abstract by Harry B. Burke, M.D., Ph.D., Philip H. Goodman, M.D., M.S., David B. Rosen, Ph.D. , Donald E. Henson, M.D. , John N. Weinstein, M.D., Ph.D.4, Frank E. Harrell Jr., Ph.D. , Jeffrey R. Marks, Ph.D. , David P. Winchester, M.D. , David G. Bostwick, M.D

	Open (110 KB)


18 Jul 2001	NevProp Manual with Introduction to Artificial Neural Network Theory Abstract by Philip H. Goodman, Frank E. Harrell, Jr.

	Open (964 KB)

Date Posted On	Software
08 Aug 2003	EvalCellTracings: Multicell Tracing Analysis Tool Abstract by Phil Goodman

	Download (5069 KB)


07 Aug 2003	NEUROPLOT: Software for Analysis of Large-Scale NN Data Abstract by P Goodman

	Download (86 KB)


26 Jul 2001	NevProp Artificial Neural Network Software with Cross-Validation and Boostrapped Confidence Intervals Abstract by Philip H. Goodman, David B. Rosen

	Download (1131 KB)





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